This gallery shows various biological networks visualised by AllegroLayout 2.0 for Cytoscape 3.x.

Each album has 8 layout images:

1. Spring-Electric, 2. Edge-Repulsive Spring-Electric, 3. Fruchterman-Reingold, 4. Edge Repulsive Fruchterman-Reingold, 5. Weak Clustering, 6. Edge-Repulsive Weak Clustering, 7. Strong Clustering, 8. Edge-Repulsive Strong Clustering

BioGRID Organism: Mus Musculus (5,534 nodes, 12,919 edges)

  • Mus Musculus (Spring-Electric Layout)
  • Mus Musculus (Edge-Repulsive Spring Electric Layout)
  • Mus Musculus (Fruchterman-Reingold Layout)
  • Mus Musculus (Edge-Repulsive Fruchterman-Reingold Layout)
  • Mus Musculus (Weak Clustering Layout)
  • Mus Musculus (Egde Repulsive Weak Clustering Layout)
  • Mus Musculus (Strong Clustering Layout)
  • Mus Musculus (Edge-Repulsive Strong Clustering Layout)

BioGRID Organism: Arabidopsis Thaliana (5,991 nodes, 16,846 edges)

  • Arabidopsis-thaliana (Spring-Electric Layout)
  • Arabidopsis-thaliana (Edge-Repulsive Spring-Electric Layout)
  • Arabidopsis Thaliana (Fruchterman Reingold Layout)
  • Arabidopsis Thaliana (Edge Repulsive Fruchterman-Reingold Layout)
  • Arabidopsis Thaliana (Weak Clustering Layout)
  • Arabidopsis Thaliana (Edge-Repulsive Weak Clustering Layout)
  • Arabidopsis Thaliana (Strong Clustering Layout)
  • Arabidopsis Thaliana (Edge-Repulsive Strong Clustering Layout)

BioGRID Organism: Drosophila Melanogaster (8,165 nodes, 45,878 edges)

  • Drosophila melanogaster (Spring-Electric Layout)
  • Drosophila melanogaster (Edge-Repulsive Spring-Electric Layout)
  • Drosophila melanogaster (Fruchterman-Reingold Layout)
  • Drosophila melanogaster (Edge-Repulsive Fruchterman-Reingold Layout)
  • Drosophila melanogaster (Weak Clustering Layout)
  • Drosophila melanogaster (Edge-Repulsive Weak Clustering Layout)
  • Drosophila melanogaster (Strong Clustering Layout)
  • Drosophila melanogaster (Edge-Repulsive Strong Clustering Layout)

galFiltered (331 nodes, 362 edges)

  • galFiltered (Spring-Electric Layout)
  • galFiltered (Edge-Repulsive Spring-Electric Layout)
  • galFiltered (Fruchterman-Reingold Layout)
  • galFiltered (Edge-Repulsive Fruchterman-Reingold Layout)
  • galFiltered (Weak Clustering Layout)
  • galFiltered (Edge-Repulsive Weak Clustering Layout)
  • galFiltered (Strong Clustering Layout)
  • galFiltered (Edge-Repulsive Strong Clustering Layout)

yeastHighQuality (3,025 nodes, 6,888 edges)

  • yeastHighQuality (Spring Electric Layout)
  • yeastHighQuality (Edge-Repulsive Spring Electric Layout)
  • yeastHighQuality (Fruchterman-Reingold Layout)
  • yeastHighQuality (Edge-Repulsive Fruchterman-Reingold Layout)
  • yeastHighQuality (Weak Clustering Layout)
  • yeastHighQuality (Edge-Repulsive Weak Clustering Layout)
  • yeastHighQuality (Strong Clustering Layout)
  • yeastHighQuality (Edge-Repulsive Strong Clustering Layout)

BINDhuman (19,905 nodes, 38,706 edges)

  • BINDhuman (Fruchterman Reingold Layout)