AllegroMCODE plugin for Cytoscape exploits our high performance GPU computing architecture to make your analysis task faster than ever since the MCODE cluster finding algorithm can be long for large complex networks even though MCODE is a relatively fast clustering method.

AllegroMCODE plugin provides our proprietary highly parallel algorithm based on the original sequential MCODE algorithm. It can achieve hundreds of times speedup for the analysis of a large complex network by using the NVIDIA graphics cards and usually takes less than a second to find clusters in a large complex network.

GPU-accelerated AllegroMCODE vs. Original MCODE

Test Networks

Algorithm Options

System Specification