The remote GPU computing of the AllegroMCODE 1.0 Cytoscape plugin is no longer available now.

Please try AllegroMCODE 2.x plugin which supports local Nvidia GPU on Windows, Mac, and Linux.

You can try the fully featured professional edition free for 15 days. Without registering the license, you can still use it as the free community edition with the reliable analysis function and intuitive cluster explorer without the GPU acceleration.

go to AllegroMCODE in Cytoscape App Store

Totally Redesigned User Interface of AllegroMCODE v2.x

The new version has totally redesigned intuitive user interface. Its cluster explorer helps you to navigate and refine clusters interactively. You can select nodes and edges in a cluster and zoom in/out a cluster without creating a sub-network.